Why am I unable to access the biocreative-ppi package from NLTK?












0















I am trying to utilize biocreative-ppi package from NLTK on Google Colaboratory and on my personal laptop. However, even though I am able to download the biocreative-ppi package from NLTK, I am not able to access the biocreative_ppi package. I have done the following:




  • Uninstalled and reinstalled the nltk package on my laptop and on Google Colaboratory

  • Tried to download other packages from NLTK. I was successful at downloading brown

  • Spelled biocreative_ppi as biocreative,bcppi, bc_ppi, etc.


Here is the website for biocreative_ppi. As you can see, the package is not deprecated. It should still be available.



Here is the code from my Colaboratory notebook:



import subprocess
import nbformat
import json, os
import random
import spacy
import nltk
import nltk.corpus
nltk.download('brown')
nltk.corpus.brown
nltk.download('biocreative_ppi')
nltk.corpus.biocreative_ppi
[nltk_data] Downloading package brown to /root/nltk_data...
[nltk_data] Unzipping corpora/brown.zip.
[nltk_data] Error loading biocreative_ppi: Package 'biocreative_ppi'
[nltk_data] not found in index
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-4-4f6d73ab2d12> in <module>()
2 nltk.corpus.brown
3 nltk.download('biocreative_ppi')
----> 4 nltk.corpus.biocreative_ppi

/usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
120 'Module load triggered by attribute %r read access' % name)
121 module = self.__lazymodule_import()
--> 122 return getattr(module, name)
123
124 def __setattr__(self, name, value):

AttributeError: module 'nltk.corpus' has no attribute 'biocreative'


The example above shows I can access brown. The following code will show I can successfully download biocreative_ppi but can't access it.



import subprocess
import nbformat
import json, os
import random
import spacy
import nltk
import nltk.corpus
nltk.download('biocreative_ppi')
nltk.corpus.biocreative_ppi
[nltk_data] Downloading package biocreative_ppi to /root/nltk_data...
[nltk_data] Package biocreative_ppi is already up-to-date!
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-2-bcfe9c01d5cf> in <module>()
1 nltk.download('biocreative_ppi')
----> 2 nltk.corpus.biocreative_ppi

/usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
120 'Module load triggered by attribute %r read access' % name)
121 module = self.__lazymodule_import()
--> 122 return getattr(module, name)
123
124 def __setattr__(self, name, value):

AttributeError: module 'nltk.corpus' has no attribute 'biocreative_ppi'


I am aware that the biocreative_ppi dataset is also available through Kaggle and Biocreative's GitHub. However, I do not understand why I am able to download biocreative_ppi through nltk but can't access any of the subdirectories or files associated with biocreative_ppi. Please let me know if you can help me out. Thank you for your consideration, and I am open to any suggestions.










share|improve this question



























    0















    I am trying to utilize biocreative-ppi package from NLTK on Google Colaboratory and on my personal laptop. However, even though I am able to download the biocreative-ppi package from NLTK, I am not able to access the biocreative_ppi package. I have done the following:




    • Uninstalled and reinstalled the nltk package on my laptop and on Google Colaboratory

    • Tried to download other packages from NLTK. I was successful at downloading brown

    • Spelled biocreative_ppi as biocreative,bcppi, bc_ppi, etc.


    Here is the website for biocreative_ppi. As you can see, the package is not deprecated. It should still be available.



    Here is the code from my Colaboratory notebook:



    import subprocess
    import nbformat
    import json, os
    import random
    import spacy
    import nltk
    import nltk.corpus
    nltk.download('brown')
    nltk.corpus.brown
    nltk.download('biocreative_ppi')
    nltk.corpus.biocreative_ppi
    [nltk_data] Downloading package brown to /root/nltk_data...
    [nltk_data] Unzipping corpora/brown.zip.
    [nltk_data] Error loading biocreative_ppi: Package 'biocreative_ppi'
    [nltk_data] not found in index
    ---------------------------------------------------------------------------
    AttributeError Traceback (most recent call last)
    <ipython-input-4-4f6d73ab2d12> in <module>()
    2 nltk.corpus.brown
    3 nltk.download('biocreative_ppi')
    ----> 4 nltk.corpus.biocreative_ppi

    /usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
    120 'Module load triggered by attribute %r read access' % name)
    121 module = self.__lazymodule_import()
    --> 122 return getattr(module, name)
    123
    124 def __setattr__(self, name, value):

    AttributeError: module 'nltk.corpus' has no attribute 'biocreative'


    The example above shows I can access brown. The following code will show I can successfully download biocreative_ppi but can't access it.



    import subprocess
    import nbformat
    import json, os
    import random
    import spacy
    import nltk
    import nltk.corpus
    nltk.download('biocreative_ppi')
    nltk.corpus.biocreative_ppi
    [nltk_data] Downloading package biocreative_ppi to /root/nltk_data...
    [nltk_data] Package biocreative_ppi is already up-to-date!
    ---------------------------------------------------------------------------
    AttributeError Traceback (most recent call last)
    <ipython-input-2-bcfe9c01d5cf> in <module>()
    1 nltk.download('biocreative_ppi')
    ----> 2 nltk.corpus.biocreative_ppi

    /usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
    120 'Module load triggered by attribute %r read access' % name)
    121 module = self.__lazymodule_import()
    --> 122 return getattr(module, name)
    123
    124 def __setattr__(self, name, value):

    AttributeError: module 'nltk.corpus' has no attribute 'biocreative_ppi'


    I am aware that the biocreative_ppi dataset is also available through Kaggle and Biocreative's GitHub. However, I do not understand why I am able to download biocreative_ppi through nltk but can't access any of the subdirectories or files associated with biocreative_ppi. Please let me know if you can help me out. Thank you for your consideration, and I am open to any suggestions.










    share|improve this question

























      0












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      0


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      I am trying to utilize biocreative-ppi package from NLTK on Google Colaboratory and on my personal laptop. However, even though I am able to download the biocreative-ppi package from NLTK, I am not able to access the biocreative_ppi package. I have done the following:




      • Uninstalled and reinstalled the nltk package on my laptop and on Google Colaboratory

      • Tried to download other packages from NLTK. I was successful at downloading brown

      • Spelled biocreative_ppi as biocreative,bcppi, bc_ppi, etc.


      Here is the website for biocreative_ppi. As you can see, the package is not deprecated. It should still be available.



      Here is the code from my Colaboratory notebook:



      import subprocess
      import nbformat
      import json, os
      import random
      import spacy
      import nltk
      import nltk.corpus
      nltk.download('brown')
      nltk.corpus.brown
      nltk.download('biocreative_ppi')
      nltk.corpus.biocreative_ppi
      [nltk_data] Downloading package brown to /root/nltk_data...
      [nltk_data] Unzipping corpora/brown.zip.
      [nltk_data] Error loading biocreative_ppi: Package 'biocreative_ppi'
      [nltk_data] not found in index
      ---------------------------------------------------------------------------
      AttributeError Traceback (most recent call last)
      <ipython-input-4-4f6d73ab2d12> in <module>()
      2 nltk.corpus.brown
      3 nltk.download('biocreative_ppi')
      ----> 4 nltk.corpus.biocreative_ppi

      /usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
      120 'Module load triggered by attribute %r read access' % name)
      121 module = self.__lazymodule_import()
      --> 122 return getattr(module, name)
      123
      124 def __setattr__(self, name, value):

      AttributeError: module 'nltk.corpus' has no attribute 'biocreative'


      The example above shows I can access brown. The following code will show I can successfully download biocreative_ppi but can't access it.



      import subprocess
      import nbformat
      import json, os
      import random
      import spacy
      import nltk
      import nltk.corpus
      nltk.download('biocreative_ppi')
      nltk.corpus.biocreative_ppi
      [nltk_data] Downloading package biocreative_ppi to /root/nltk_data...
      [nltk_data] Package biocreative_ppi is already up-to-date!
      ---------------------------------------------------------------------------
      AttributeError Traceback (most recent call last)
      <ipython-input-2-bcfe9c01d5cf> in <module>()
      1 nltk.download('biocreative_ppi')
      ----> 2 nltk.corpus.biocreative_ppi

      /usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
      120 'Module load triggered by attribute %r read access' % name)
      121 module = self.__lazymodule_import()
      --> 122 return getattr(module, name)
      123
      124 def __setattr__(self, name, value):

      AttributeError: module 'nltk.corpus' has no attribute 'biocreative_ppi'


      I am aware that the biocreative_ppi dataset is also available through Kaggle and Biocreative's GitHub. However, I do not understand why I am able to download biocreative_ppi through nltk but can't access any of the subdirectories or files associated with biocreative_ppi. Please let me know if you can help me out. Thank you for your consideration, and I am open to any suggestions.










      share|improve this question














      I am trying to utilize biocreative-ppi package from NLTK on Google Colaboratory and on my personal laptop. However, even though I am able to download the biocreative-ppi package from NLTK, I am not able to access the biocreative_ppi package. I have done the following:




      • Uninstalled and reinstalled the nltk package on my laptop and on Google Colaboratory

      • Tried to download other packages from NLTK. I was successful at downloading brown

      • Spelled biocreative_ppi as biocreative,bcppi, bc_ppi, etc.


      Here is the website for biocreative_ppi. As you can see, the package is not deprecated. It should still be available.



      Here is the code from my Colaboratory notebook:



      import subprocess
      import nbformat
      import json, os
      import random
      import spacy
      import nltk
      import nltk.corpus
      nltk.download('brown')
      nltk.corpus.brown
      nltk.download('biocreative_ppi')
      nltk.corpus.biocreative_ppi
      [nltk_data] Downloading package brown to /root/nltk_data...
      [nltk_data] Unzipping corpora/brown.zip.
      [nltk_data] Error loading biocreative_ppi: Package 'biocreative_ppi'
      [nltk_data] not found in index
      ---------------------------------------------------------------------------
      AttributeError Traceback (most recent call last)
      <ipython-input-4-4f6d73ab2d12> in <module>()
      2 nltk.corpus.brown
      3 nltk.download('biocreative_ppi')
      ----> 4 nltk.corpus.biocreative_ppi

      /usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
      120 'Module load triggered by attribute %r read access' % name)
      121 module = self.__lazymodule_import()
      --> 122 return getattr(module, name)
      123
      124 def __setattr__(self, name, value):

      AttributeError: module 'nltk.corpus' has no attribute 'biocreative'


      The example above shows I can access brown. The following code will show I can successfully download biocreative_ppi but can't access it.



      import subprocess
      import nbformat
      import json, os
      import random
      import spacy
      import nltk
      import nltk.corpus
      nltk.download('biocreative_ppi')
      nltk.corpus.biocreative_ppi
      [nltk_data] Downloading package biocreative_ppi to /root/nltk_data...
      [nltk_data] Package biocreative_ppi is already up-to-date!
      ---------------------------------------------------------------------------
      AttributeError Traceback (most recent call last)
      <ipython-input-2-bcfe9c01d5cf> in <module>()
      1 nltk.download('biocreative_ppi')
      ----> 2 nltk.corpus.biocreative_ppi

      /usr/local/lib/python3.6/dist-packages/nltk/lazyimport.py in __getattr__(self, name)
      120 'Module load triggered by attribute %r read access' % name)
      121 module = self.__lazymodule_import()
      --> 122 return getattr(module, name)
      123
      124 def __setattr__(self, name, value):

      AttributeError: module 'nltk.corpus' has no attribute 'biocreative_ppi'


      I am aware that the biocreative_ppi dataset is also available through Kaggle and Biocreative's GitHub. However, I do not understand why I am able to download biocreative_ppi through nltk but can't access any of the subdirectories or files associated with biocreative_ppi. Please let me know if you can help me out. Thank you for your consideration, and I am open to any suggestions.







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      asked Feb 12 at 3:01









      Veena GhorakaviVeena Ghorakavi

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